PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC5257_p1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 376aa    MW: 42058.2 Da    PI: 7.5513
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC5257_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16182228455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  hn  Er+RRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  RrC5257_p1 182 VHNLSERKRRDRINERMKALQELIPRC-----NKSDKASMLDEAIEYMKSLQ 228
                 6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.94E-16181232No hitNo description
SuperFamilySSF474595.76E-21181256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13182228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-21182239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-17184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MELLWHNGQE DEMSSWLHYP LRDEDDFCSD LFLPPERQTS NQVVTAARPP VPSTVRPPEA  60
SSMRPPAPLP SSVRPPVRNF MNFSRLRGDF TGRGGESGPS VSKSTVREST QGKAVVTTEP  120
RNENPAGASS SLASKSEIEP FNETTIVDER KRKEREAIDE TEEEAKQGRG STSTKRSRAA  180
EVHNLSERKR RDRINERMKA LQELIPRCNK SDKASMLDEA IEYMKSLQLQ IQMMSMGCGM  240
MPMMYTGMQQ YMPHMAMGMG MGMDMGMNRP PPPPPPPFIP FPNMLASQRP LPPQTRMGGY  300
PAVQASDPSR VYGSNQQFVP NSNQAPYSGY MDPYQQFRSL HPSQPPQFQN QAASYPSSSR  360
VSSTKESEDQ GNQTTS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERKRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013593130.11e-154PREDICTED: transcription factor PIF1 isoform X2
SwissprotQ8GZM71e-142PIF1_ARATH; Transcription factor PIF1
TrEMBLA0A078H3J91e-158A0A078H3J9_BRANA; BnaA07g00060D protein
STRINGAT2G20180.21e-140(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM71082643
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.12e-74phytochrome interacting factor 3-like 5